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Briefings in Bioinformatics 2006 7(4):407-412; doi:10.1093/bib/bbl042
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© Oxford University Press, 2006. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Abstracts

The first 150 words of the full text of this article appear below.

Briefings in Bioinformatics aims to provide working biologists with an awareness and understanding of the computational approaches available for research and discovery. The Abstracts section of the journal consists of summaries of bioinformatics manuscripts published in the previous quarter. Inclusion of an article in this section indicates that the editors consider it to be among the most interesting and/or useful contributions to the field for the quarter covered. The contents of these reports are briefly distilled for the readers with an emphasis placed on their biological context and potential utility. Publications from the third quarter of 2006 (July–September), with an emphasis on computational resources for the detection and analysis of orthologous groups of genes (proteins), are reviewed here.


   Roundup: a multi-genome repository of orthologs and evolutionary distances
 
Todd F. DeLuca, I-Hsien Wu, Jian Pu, Thomas Monaghan, Leonid Peshkin, Saurav Singh and Dennis P. Wall

Bioinformatics (2006) Vol. 22, no. 16,

pp. 2044–2046

Orthologs are genes (proteins) that share a . . . [Full Text of this Article]


   PhyloPat: phylogenetic pattern analysis of eukaryotic genes
 

   PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification
 

   Functional noncoding sequences derived from SINEs in the mammalian genome
 

   Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
 

   An initial map of insertion and deletion (INDEL) variation in the human genome
 

   Bacterial regulatory networks are extremely flexible in evolution
 

   Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication
 
I. King Jordan

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