Briefings in Bioinformatics

Editorial

Rolf Apweiler

Focus on InterPro
Brief Bioinform 2002 3: 221-223; doi:10.1093/bib/3.3.221 [PDF] [Request Permissions]  

Papers

The InterPro Consortium, Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Phillip Bucher, Richard Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jerome Gouzy, Sam Griffith-Jones, Daniel Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sandra Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, and Christian J. A. Sigrist

InterPro: An integrated documentation resource for protein families, domains and functional sites
Brief Bioinform 2002 3: 225-235; doi:10.1093/bib/3.3.225 [Abstract] [PDF] [Request Permissions]  

Alex Bateman and Daniel H. Haft

HMM-based databases in InterPro
Brief Bioinform 2002 3: 236-245; doi:10.1093/bib/3.3.236 [Abstract] [PDF] [Request Permissions]  

Florence Servant, Catherine Bru, Sébastien Carrère, Emmanuel Courcelle, Jérôme Gouzy, David Peyruc, and Daniel Kahn

ProDom: Automated clustering of homologous domains
Brief Bioinform 2002 3: 246-251; doi:10.1093/bib/3.3.246 [Abstract] [PDF] [Request Permissions]  

Terri K. Attwood

The PRINTS database: A resource for identification of protein families
Brief Bioinform 2002 3: 252-263; doi:10.1093/bib/3.3.252 [Abstract] [PDF] [Request Permissions]  

Christian J. A. Sigrist, Lorenzo Cerutti, Nicolas Hulo, Alexandre Gattiker, Laurent Falquet, Marco Pagni, Amos Bairoch, and Philipp Bucher

PROSITE: A documented database using patterns and profiles as motif descriptors
Brief Bioinform 2002 3: 265-274; doi:10.1093/bib/3.3.265 [Abstract] [PDF] [Request Permissions]  

Claire O'Donovan, Maria Jesus Martin, Alexandre Gattiker, Elisabeth Gasteiger, Amos Bairoch, and Rolf Apweiler

High-quality protein knowledge resource: SWISS-PROT and TrEMBL
Brief Bioinform 2002 3: 275-284; doi:10.1093/bib/3.3.275 [Abstract] [PDF] [Request Permissions]  

Margaret Biswas, John F. O'Rourke, Evelyn Camon, Gill Fraser, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia Kriventseva, Virginie Mittard, Nicola Mulder, Isabelle Phan, Florence Servant, and Rolf Apweiler

Applications of InterPro in protein annotation and genome analysis
Brief Bioinform 2002 3: 285-295; doi:10.1093/bib/3.3.285 [Abstract] [PDF] [Request Permissions]  

Software review

Harry Mangalam

The Bio^* toolkits — a brief overview
Brief Bioinform 2002 3: 296-302; doi:10.1093/bib/3.3.296 [Abstract] [PDF] [Request Permissions]  

Tutorial section

Lisa J. Mullan

Multiple sequence alignment — the gateway to further analysis
Brief Bioinform 2002 3: 303-305; doi:10.1093/bib/3.3.303 [PDF] [Request Permissions]  

Abstracts

I King Jordan

Abstracts
Brief Bioinform 2002 3: 306-313; doi:10.1093/bib/3.3.306 [PDF] [Request Permissions]  

News section

Daniel S. Gonzalez

News section
Brief Bioinform 2002 3: 314-317; doi:10.1093/bib/3.3.314 [PDF] [Request Permissions]  

Book reviews

Jotun Hein and Carsten Wiuf

Statistical Methods in Bioinformatics: An Introduction
Brief Bioinform 2002 3: 318-319; doi:10.1093/bib/3.3.318 [PDF] [Request Permissions]  

Andrew T. Lloyd

The Shattered Self: The End of Natural Evolution
Brief Bioinform 2002 3: 319-321; doi:10.1093/bib/3.3.319 [PDF] [Request Permissions]  

Jack Leunissen

Bioinformatics: The Machine Learning Approach
Brief Bioinform 2002 3: 321-323; doi:10.1093/bib/3.3.321 [PDF] [Request Permissions]  

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